A dataset of 10,000 gene trees on 5 taxa simulated under the MSC on a species tree.
A text file with 10,000 metric Newick gene trees on the taxa a,b,c,d,e
This simulated dataset was produced by SimPhy simphyMSCsimtester, using the species tree
((((a:10000,b:10000):10000,c:20000):10000,d:30000):10000,e:40000);
with population sizes
c(15000,25000,10000,1,1,1,1,1,12000)
and edges ordered by the ape function read.tree.
File is accessed as system.file("extdata","genetreeSample",package="MSCsimtester"), for example
using the ape command:
gts=read.tree(file=system.file("extdata","genetreeSample",package="MSCsimtester") )
simphyMSCsimtester