Spectrum-class

class:Spectrum

Spectrum

acquisitionNum,Spectrum-method

acquisitionNum

scanIndex,Spectrum-method

scanIndex

fromFile,Spectrum-method

fromFile

intensity,Spectrum-method

intensity

msLevel,Spectrum-method

msLevel

mz,Spectrum-method

peaksCount,Spectrum,missing-method

peaksCount

rtime,Spectrum-method

rtime

tic,Spectrum-method

ionCount,Spectrum-method

ionCount

centroided,Spectrum-method

centroided

centroided<-,Spectrum,ANY-method

centroided<-,Spectrum,logical-method

centroided<-

polarity,Spectrum-method

polarity

bin,Spectrum-method

clean,Spectrum-method

compareSpectra,Spectrum,Spectrum-method

estimateNoise,Spectrum-method

pickPeaks,Spectrum-method

quantify,Spectrum-method

quantify,Spectrum,character-method

removePeaks,Spectrum-method

show,Spectrum-method

smooth,Spectrum-method

trimMz,Spectrum-method

trimMz,Spectrum,numeric-method

isEmpty,Spectrum-method

coerce,Spectrum,data.frame-method

as.data.frame.Spectrum

Virtual container for spectrum data common to all different types of
  spectra. A <code>Spectrum</code> object can not be directly instanciated. Use
  <code>"<links4class>Spectrum1</links4class>"</code> and <code>"<links4class>Spectrum2</links4class>"</code>
  instead.<p></p><p>  In version 1.19.12, the <code>polarity</code> slot has been added to this
  class (previously in <code>"<links4class>Spectrum1</links4class>"</code>).</p>

classes

Basic plotting, data manipulation and processing
of MS-based Proteomics data.

Laurent Gatto

MSnbase

Base Functions and Classes for MS-based Proteomics

Spectrum-class function

Class <code>"<links4class>Versioned</links4class>"</code>, directly.

Extends

Virtual container for spectrum data common to all different types of
  spectra. A <code>Spectrum</code> object can not be directly instanciated. Use
  <code>"<linkS4class>Spectrum1</linkS4class>"</code> and <code>"<linkS4class>Spectrum2</linkS4class>"</code>
  instead.

  In version 1.19.12, the <code>polarity</code> slot has been added to this
  class (previously in <code>"<linkS4class>Spectrum1</linkS4class>"</code>).

The "Spectrum" Class

Spectrum-class: The "Spectrum" Class

Description

Arguments

Extends

See Also