GenMatch: Genetic Matching

Description

This function finds optimal balance using multivariate matching where a genetic search algorithm determines the weight each covariate is given. This function finds the optimal weight each variable should be given by Match so as to achieve balance. Balance is determined by a variety of univariate test, mainly paired t-tests for dichotomous variables and univariate Kolmogorov-Smirnov (KS) test for multinomial and continuous variables. The loss criterion defining optimal balance is determined by the loss option. The object returned by GenMatch can be supplied as the Weight.matrix option of the Match function to obtain estimates. GenMatch, via the cluster option, supports the use of multiple computers, CPUs or cores to perform parallel computations.

Usage

GenMatch(Tr, X, BalanceMatrix=X, estimand="ATT", M=1,
         weights=NULL,
         pop.size = 50, max.generations=100,
         wait.generations=4, hard.generation.limit=FALSE,
         starting.values=rep(1,ncol(X)),
         fit.func="pvals",
         data.type.integer=TRUE,
         MemoryMatrix=TRUE,
         exact=NULL, caliper=NULL, 
         nboots=0, ks=TRUE, verbose=FALSE,
         tolerance = 1e-05,
         distance.tolerance=tolerance,
         min.weight=0, max.weight=1000,
         Domains=NULL, print.level=2,
         project.path=NULL,
         paired=TRUE, loss=1,
         restrict=NULL,
         cluster=FALSE, balance=TRUE, ...)

Arguments

A vector indicating the observations which are in the treatment regime and those which are not. This can either be a logical vector or a real vector where 0 denotes control and 1 denotes treatment.

A matrix containing the variables we wish to match on. This matrix may contain the actual observed covariates or the propensity score or a combination of both.

BalanceMatrix

A matrix containing the variables we wish achieve balance on. This is by default equal to X, but it can in principle be a matrix which contains more or less variables than X or variables which are transformed in vari

estimand

A character string for the estimand. The default estimand is "ATT", the sample average treatment effect for the treated. "ATE" is the sample average treatment effect (for all), and "ATC" is the sample average treatment effect for the controls

A scalar for the number of matches which should be found (with replacement). The default is one-to-one matching.

weights

A vector the same length as Y which provides observations specific weights. If none are provides, equal weights of 1 for each observations are assumed.

pop.size

Population Size. This is the number of individuals genoud uses to solve the optimization problem. See genoud for more details.

max.generations

Maximum Generations. This is the maximum number of generations that genoud will run when attempting to optimize a function. This is a soft limit. The maximum generation limit w

wait.generations

If there is no improvement in the objective function in this number of generations, genoud will think that it has found the optimum. The other variables controlling termination are

hard.generation.limit

This logical variable determines if the max.generations variable is a binding constraint for genoud. If hard.generation.limit is FALSE, then

starting.values

This vector equal to the number of variables in X. This vector contains the starting weights each of the variables is given. The starting.values vector is a way for the user to insert one individual into the

fit.func

The balance metric GenMatch should optimize. The user may choose from the following or provide one: pvals: maximize the p.values uses from a variety of hypothesis tests. qqmean.mean: calculate the mean standardized differe

data.type.integer

By default only integer weights are considered. If this option is set to false, search will be done over floating point weights. This is usually an unnecessary degree of precision.

MemoryMatrix

This variable controls if genoud sets up a memory matrix. Such a matrix ensures that genoud will request the fitness evaluation of a giv

exact

A logical scalar or vector for whether exact matching should be done. If a logical scalar is provided, that logical value is applied to all covariates of X. If a logical vector is provided, a logical value should be provided

caliper

A scalar or vector denoting the caliper(s) which should be used when matching. A caliper is the distance which is acceptable for any match. Observations which are outside of the caliper are dropped. If a scalar caliper is provided, this cali

nboots

The number of bootstrap samples to be run for the ks test.

A logical flag for if the univariate bootstrap Kolmogorov-Smirnov (KS) test should be calculated. If the ks option is set to true, the univariate KS test is calculated for all non-dichotomous variables. The bootstrap KS test is consistent ev

verbose

If details should be printed of each fit evaluation done by the genetic algorithm. Verbose is set to FALSE if the cluster option is used.

tolerance

This is a scalar which is used to determine numerical tolerances. This option is used by numerical routines such as those used to determine if a matrix is singular.

distance.tolerance

This is a scalar which is used to determine if distances between two observations are different from zero. Values less than distance.tolerance are deemed to be equal to zero. This option can be used to perform a type of optimal

min.weight

This is the minimum weight any variable may be given.

max.weight

This is the maximum weight any variable may be given.

Domains

This is a ncol(X) $\times 2$ matrix. The first column is the lower bound, and the second column is the upper bound for each variable over which genoud will search for weights.

print.level

This option controls the level of printing. There are four possible levels: 0 (minimal printing), 1 (normal), 2 (detailed), and 3 (debug). If level 2 is selected, GenMatch will print details about the population at each generati

project.path

This is the path of the genoud project file. By default no file is produced unless print.level=3. In that case, genoud

paired

A flag for if the paired t.test should be used when determining balance.

loss

The loss function to be optimized. The default value, 1, implies "lexical" optimization: all of the balance statistics will be sorted from the most discrepant to the least and weights will be picked which minimize the maximum dis

restrict

A matrix which restricts the possible matches. This matrix has one row for each restriction and three columns. The first two columns contain the two observation numbers which are to be restricted (for example 4 and 20), and the third col

cluster

This can either be an object of the 'cluster' class returned by one of the makeCluster commands in the snow package or a vector of machine names so GenMatch can setup the c

balance

This logical flag controls if load balancing is done across the cluster. Load balancing can result in better cluster utilization; however, increased communication can reduce performance. This options is best used if each individual call to

...

Other options which are passed on to genoud.

Value

valueThe lowest p-value of the matched dataset.
parA vector of the weights given to each variable in X.
Weight.matrixA matrix whose diagonal corresponds to the weight given to each variable in X. This object corresponds to the Weight.matrix in the Match function.
matchesA matrix where the first column contains the row numbers of the treated observations in the matched dataset. The second column contains the row numbers of the control observations. And the third column contains the weight that each matched pair is given. These columns respectively correspond to the index.treated, index.control and weights objects which are returned by Match.
ecaliperThe size of the enforced caliper on the scale of the X variables. This object has the same length as the number of covariates in X.

References

Sekhon, Jasjeet S. 2006. ``Alternative Balance Metrics for Bias Reduction in Matching Methods for Causal Inference.'' Working Paper. http://sekhon.berkeley.edu/papers/SekhonBalanceMetrics.pdf

Sekhon, Jasjeet S. 2006. ``Matching: Algorithms and Software for Multivariate and Propensity Score Matching with Balance Optimization via Genetic Search.'' http://sekhon.berkeley.edu/matching/ Diamond, Alexis and Jasjeet S. Sekhon. 2005. ``Genetic Matching for Estimating Causal Effects: A General Multivariate Matching Method for Achieving Balance in Observational Studies.'' Working Paper. http://sekhon.berkeley.edu/papers/GenMatch.pdf

Sekhon, Jasjeet Singh and Walter R. Mebane, Jr. 1998. ``Genetic Optimization Using Derivatives: Theory and Application to Nonlinear Models.'' Political Analysis, 7: 187-210. http://sekhon.berkeley.edu/genoud/genoud.pdf

Examples

Run this code

set.seed(38913)

data(lalonde)
attach(lalonde)

#The covariates we want to match on
X = cbind(age, educ, black, hisp, married, nodegr, u74, u75, re75, re74);

#The covariates we want to obtain balance on
BalanceMat <- cbind(age, educ, black, hisp, married, nodegr, u74, u75, re75, re74,
                    I(re74*re75));

#Let's call GenMatch() to find the optimal weight to give each
#covariate in 'X' so as we have achieved balance on the covariates in
#'BalanceMat'. This is only an example so we want GenMatch to be quick
#to the population size has been set to be only 15 via the 'pop.size'
#option.  
genout <- GenMatch(Tr=treat, X=X, BalanceMatrix=BalanceMat, estimand="ATE", M=1,
                   pop.size=16, max.generations=10, wait.generations=1)

#The outcome variable
Y=re78/1000;

# Now that GenMatch() has found the optimal weights, let's estimate
# our causal effect of interest using those weights
mout <- Match(Y=Y, Tr=treat, X=X, estimand="ATE", Weight.matrix=genout)
summary(mout)

#                        
#Let's determine if balance has actually been obtained on the variables of interest
#                        
mb <- MatchBalance(treat~age +educ+black+ hisp+ married+ nodegr+ u74+ u75+
                   re75+ re74+ I(re74*re75),
                   match.out=mout, nboots=500, ks=TRUE, mv=FALSE)

# For more examples see: http://sekhon.berkeley.edu/matching/R.

Run the code above in your browser using DataLab