Matrix (version 0.999375-42)

lsparseMatrix-classes: Sparse logical matrices

Description

The lsparseMatrix class is a virtual class of sparse matrices with TRUE/FALSE entries. Only the positions of the elements that are TRUE are stored. These can be stored in the ``triplet'' form (classes lgTMatrix, lsTMatrix, and ltTMatrix which really contain pairs, not triplets) or in compressed column-oriented form (classes lgCMatrix, lsCMatrix, and ltCMatrix) or in compressed row-oriented form (classes lgRMatrix, lsRMatrix, and ltRMatrix). The second letter in the name of these non-virtual classes indicates general, symmetric, or triangular.

Objects from the Class

Objects can be created by calls of the form new("lgCMatrix", ...) and so on. More frequently objects are created by coercion of a numeric sparse matrix to the logical form for use in the symbolic analysis phase of an algorithm involving sparse matrices. Such algorithms often involve two phases: a symbolic phase wherein the positions of the non-zeros in the result are determined and a numeric phase wherein the actual results are calculated. During the symbolic phase only the positions of the non-zero elements in any operands are of interest, hence any numeric sparse matrices can be treated as logical sparse matrices.

See Also

the class dgCMatrix

Examples

(m <- Matrix(c(0,0,2:0), 3,5, dimnames=list(LETTERS[1:3],NULL)))
(lm <- (m > 1)) # lgC
!lm     # no longer sparse
stopifnot(is(lm,"lsparseMatrix"),
          identical(!lm, m <= 1))

data(KNex)
str(mmG.1 <- (KNex $ mm) > 0.1)# "lgC..."
table(mmG.1@x)# however with many ``non-structural zeros''
## from logical to nz_pattern -- okay when there are no NA's :
nmG.1 <- as(mmG.1, "nMatrix") # <<< has "TRUE" also where mmG.1 had FALSE
## from logical to "double"
dmG.1 <- as(mmG.1, "dMatrix") # has '0' and back:
lmG.1 <- as(dmG.1, "lMatrix") # has no extra FALSE, i.e. drop0() included
stopifnot(identical(nmG.1, as((KNex $ mm) != 0,"nMatrix")),
          validObject(lmG.1), all(lmG.1@x),
          # same "logical" but lmG.1 has no 'FALSE' in x slot:
          all(lmG.1 == mmG.1))

class(xnx <- crossprod(nmG.1))# "nsC.."
class(xlx <- crossprod(mmG.1))# "dsC.." : numeric
is0 <- (xlx == 0)
mean(as.vector(is0))# 99.3\% zeros: quite sparse, but
table(xlx@x == 0)# more than half of the entries are (non-structural!) 0
stopifnot(isSymmetric(xlx), isSymmetric(xnx),
          ## compare xnx and xlx : have the *same* non-structural 0s :
          sapply(slotNames(xnx),
                 function(n) identical(slot(xnx, n), slot(xlx, n))))