getdata: This function read the output from Methpup into R
Description
This function read the output from Methpup into R
Usage
getdata(filelist, n, gene)
Arguments
filelist
the directory where the output files are
saved in
gene
the region that you are interested to look at
the methylation profile
n
the number of CpG sites in the region that you
specified in "gene".
Value
This function could yield a dataframe saying the read
number detected in each methylation pattern in the given
region in all samples under "filelist" directory.