Learn R Programming

MiPP (version 1.44.0)

Misclassification Penalized Posterior Classification

Description

This package finds optimal sets of genes that seperate samples into two or more classes.

Copy Link

Version

Version

1.44.0

License

GPL (>= 2)

Maintainer

Sukwoo Kim

Last Published

February 15th, 2017

Functions in MiPP (1.44.0)

get.mipp.svm.rbf

Fitting SVM (RBF) to compute MiPP
colon

Gene expression data for colon cancer
cv.mipp.rule

Fitting cross-validaion MiPP
leuk2

Gene expression data for leukemia
quant.normal

Quantile normalization
mipp.seq

MiPP-based Classification
leuk1

Gene expression data for leukemia
get.mipp.lda

Fitting LDA to compute MiPP
mipp.preproc

Preprocessing
mipp.rule

Computing MiPP
get.mipp

Choosing a rule
quant.normal2

Quantile normalization
leukemia

Gene expression data for leukemia
get.mipp.qda

Fitting QDA to compute MiPP
linearkernel.decision.function

SVM (linear) kernel to compute MiPP
get.mipp.svm.linear

Fitting SVM (linear) to compute MiPP
pre.select

Pre-selection
mipp

MiPP-based Classification
rbfkernel.decision.function

SVM (RBF) kernel to compute MiPP
get.mipp.logistic

Fitting logistic model to compute MiPP