MiRSEA (version 1.1.1)

PlotHeatMap: Plot a heat map

Description

Plot a heat map for a microRNA(miRNA) set which co-regulate pathway

Usage

PlotHeatMap(miRlist,input.ds,input.cls)

Arguments

miRlist

A list of miRNA LIST result obtained from the MsReport function

input.ds

Input miRNA expression Affymetrix dataset file in GCT format

input.cls

Input class vector (phenotype) file in CLS format

Author

Junwei Han,Siyao Liu

Details

Plots a heatmap of a miRNA set in the expression matrix including phenotype vector and miRNA, sample and phenotype labels

See Also

PlotHeatMap, MsReport

Examples

if (FALSE) {
#get example data
#input.ds <- readLines("F:/lsy/xin data/GSE36915.gct")
#input.cls <- readLines("F:/lsy/xin data/GSE36915.cls")
input.ds <- GetExampleData("dataset")
input.cls <- GetExampleData("class.labels")

#get a list of miRNA list result
miRlist<-GetExampleData("miRList")
#Plot a heat map
PlotHeatMap(miRlist,input.ds,input.cls)
}