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MiSPU (version 1.0)

throat.tree:

UPGMA tree of the OTUs from 16S sequencing of the throat microbiome samples.

Description

The OTU tree is constructed using UPGMA on the K80 distance matrice of the OTUs. It is a rooted tree of class "phylo".

Usage

data(throat.tree)

Arguments

Format

The format is: chr "throat.tree"

Source

Charlson ES, Chen J, Custers-Allen R, Bittinger K, Li H, et al. (2010) Disordered Microbial Communities in the Upper Respiratory Tract of Cigarette Smokers. PLoS ONE 5(12): e15216.

Details

The OTUs are produced by the QIIME software. Singleton OTUs have been discarded.

Examples

Run this code
data(throat.tree)
## maybe str(throat.tree) ; plot(throat.tree) ...

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