MiST.data

datasets

Test for association between a set of SNPS/genes and
continuous or binary outcomes by including variant
characteristic information and using (weighted) score
statistics.

Jianping Sun

MiST

Mixed effects Score Test for continuous outcomes

MiST.data function

MiST.data contains the following objects: <ul>
<li>G:  
             a numeric genotype matrix of 3400 individuals and 93 SNPs. 
             Each row represents a individual, and each column represents a SNP marker. </li>
<li>X:  
             a numeric matrix of covariates with the first column represents intercept, the second column represents a continuous covariate,
             and the third column represents a binary covariate. </li>
<li>Z:  
             a numeric vector of 1s for the second level covariate. </li>
<li>Z.func:  
                  a numeric matrix for the second level covariate. The first column contains all 1s, representing the intercept, and the second column
                  is 0 or 1, representing whether a SNP marker is functional or non-functional. </li>
<li>maf:  
               a numeric vector for the Minor Allele Frequecy of 93 SNPs. </li>
<li>y.con:  
                 a numeric vector of continuous outcomes. </li>
<li>y.bin:  
                 a numeric vector of binary outcomes. </li>
</ul> 

MiST.data: Data Example for MiST

Description

Usage

Arguments

Format

Examples