smokers

A dataset containing "otu", "tax", meta", "genus", family"

datasets

A suite of methods for powerful and robust microbiome data analysis addressing zero-inflation, phylogenetic structure and compositional effects (Zhou et al. (2022)<doi:10.1186/s13059-022-02655-5>). The methods can be applied to the analysis of other (high-dimensional) compositional data arising from sequencing experiments.

Jun Chen

MicrobiomeStat

Statistical Methods for Microbiome Compositional Data

Xianyang Zhang

Huijuan Zhou

smokers function

A list with elements<dl>
 <dt>otu</dt>
<dd>otu table, 2156 taxa by 290 samples</dd> <dt>tax</dt>
<dd>taxonomy table, 2156 taxa by 7 taxonomic ranks</dd> <dt>meta</dt>
<dd>meta table, 290 samples by 53 sample variables</dd> <dt>genus</dt>
<dd>304 by 290</dd> <dt>family</dt>
<dd>113 by 290</dd>
</dl>

Format

Microbiome data from the human upper respiratory tract (left and right throat) — smokers

A list with elements<dl>
 <dt>otu</dt>
<dd>otu table, 2156 taxa by 290 samples</dd>

 <dt>tax</dt>
<dd>taxonomy table, 2156 taxa by 7 taxonomic ranks</dd>

 <dt>meta</dt>
<dd>meta table, 290 samples by 53 sample variables</dd>

 <dt>genus</dt>
<dd>304 by 290</dd>

 <dt>family</dt>
<dd>113 by 290</dd>


</dl>

smokers: Microbiome data from the human upper respiratory tract (left and right throat)

Description

Usage

Arguments

Format