MinimumDistance (version 1.16.0)

DNAcopyParam: Constructor for DNAcopyParam class

Description

Creates an instance of a parameter class for circular binary segmentation of the minimum distance and the log R ratios. Parameters in this object are passed to the segment function in the package DNAcopy.

Usage

DNAcopyParam(alpha = 0.01, min.width = 2L, undo.splits = c("none", "prune", "sdundo"), undo.SD = 3)

Arguments

alpha

see segment

min.width

see segment

undo.splits

see segment

undo.SD

see segment

See Also

segment

Examples

segment_params <- DNAcopyParam(alpha=0.01)
params <- MinDistParam(dnacopy=segment_params)