MinimumDistance (version 1.16.0)

MAP2: Computes maximum a posteriori estimate for the trio copy number state

Description

Computes maximum a posteriori estimate for the trio copy number state

Usage

MAP2(object, mdgr, param = MinDistParam(), ...)
"MAP2"(object, mdgr, param = MinDistParam(), ...)
"MAP2"(object, mdgr, param = MinDistParam(), ...)
"MAP2"(object, mdgr, param = MinDistParam(), ...)

Arguments

object

An object of class MinDistExperiment

mdgr

An object of class MinDistGRanges, GRangesList, or GRanges.

param

An object of class MinDistParam.

...

ignored

Value

An object of class MinDistPosterior

Examples

  library(oligoClasses)
  library(VanillaICE)
  library(MinimumDistance)
  ## A MinDistExperiment object:
  data(md_exp)
  ## Segmented data
  data(md_gr)
  e_param <- EmissionParam(temper=1, p_outlier=1/100)
  param <- MinDistParam(thin=1L, emission=e_param)
## Not run: 
#   md_g <- MAP2(md_exp, md_gr, param)
# ## End(Not run)