MinDistParam-class

nMAD,MinDistParam-method

nMAD<-,MinDistParam,numeric-method

show,DNAcopyParam-method

show,MinDistParam-method

object

value


Contains parameters used for circular binary segmentation (package
DNAcopy), parameters in the PennCNV hidden Markov model, and
parameters used for computing emission probabilities.


Analysis of de novo copy number variants in trios from
high-dimensional genotyping platforms.

Robert Scharpf

MinimumDistance

A Package for De Novo CNV Detection in Case-Parent Trios

MinDistParam-class function

 <dl>
<dt><code>nMAD</code></dt><dd>a length-one numeric vector</dd> <dt><code>dnacopy</code></dt><dd>an object of class <code>DNAcopyParam</code></dd> <dt><code>penncnv</code></dt><dd>an object of class <code>PennParam</code></dd> <dt><code>emission</code></dt><dd>an object of class <code>EmissionParam</code></dd> <dt><code>thin</code></dt><dd>a length-one non-negative integer</dd> </dl>

Slots

Contains parameters used for circular binary segmentation (package
DNAcopy), parameters in the PennCNV hidden Markov model, and
parameters used for computing emission probabilities.

MinDistParam-class: Class and methods for parameters of minimum distance algorithm

Description

Usage

Arguments

Slots