MotIV (version 1.28.0)

FOXA1_rGADEM: Dataset for FOXA1

Description

This dataset contains results obtained by rGADEM for the FOXA1 transcription factor.

Usage

gadem

References

http://genomebiology.com/2008/9/9/R137

Examples

#####Database and Scores#####
path <- system.file(package="MotIV")
data(jaspar2010)
data(jaspar2010_scores)

#####Input#####
data(FOXA1_rGADEM)
motifs <- getPWM(gadem)
motifs.trimed <- lapply(motifs,trimPWMedge, threshold=1)

#####Analysis#####
foxa1.analysis.jaspar <- motifMatch(inputPWM=motifs,align="SWU",cc="PCC",database=jaspar,DBscores=jaspar.scores,top=5)
summary(foxa1.analysis.jaspar )