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MtreeRing (version 1.1)

A Shiny Application for Automatic Measurements of Tree-Ring Widths on Digital Images

Description

Use morphological image processing and edge detection algorithms to automatically identify tree-ring boundaries on digital images. Tree-ring boundaries are determined by the changes of light reflectance from late wood to early wood. Two geometric models are provided to calibrate the errors resulted from inclined rings. The package provides a Shiny-based application, allowing R beginners to easily analyze tree-ring images and export ring-width series in standard file formats.

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Version

Install

install.packages('MtreeRing')

Monthly Downloads

197

Version

1.1

License

GPL-3

Maintainer

Jingning Shi

Last Published

October 16th, 2018

Functions in MtreeRing (1.1)

calcRingWidth

Generate a ring-width series
imgInput

Read and plot a tree-ring image file
MtreeRing-package

A Shiny Application for Automatic Measurements of Tree-Ring Widths on Digital Images
autoDetect

Automatic detection of tree-ring boundaries
launchMtRApp

Run Shiny-based Application
nearPith

Calibrate ring-width series
visualSelect

Edit ring borders visually