mPhen.defineOptions

specified if the options are in a script file and not set manually

file

If running from a script using command Rscript, then this will read in command line options, such as \'--mPhen.logp=FALSE\'

getOptionsFromCommandLine

This reads options from the command-line, if provided. Also it can replace references to system variables in option values, such as '*' or \$WORK, with fully qualified values. Also translates coordinates which use Gb, Mb, Kb to integer values. All defined options of the form mPhen.xxx are examined and modified.

 regression

 genetics

 file

 gwas 

 multiple phenotypes 

 association 

 connection 

Performs genetic association tests between SNPs
(one-at-a-time) and multiple phenotypes (separately or in joint
model).

Lachlan Coin

MultiPhen

A Package to Test for Multi-Trait Association

mPhen.defineOptions function

Defines and modifies  options. — mPhen.defineOptions

Defines and modifies  options.

mPhen.defineOptions: Defines and modifies options.

Description

Usage

Arguments

Value