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NAM (version 1.7.3)

Nested Association Mapping

Description

Designed for association studies in nested association mapping (NAM) panels, experimental and random panels. The method is described by Xavier et al. (2015) . It includes tools for genome-wide associations of multiple populations, marker quality control, population genetics analysis, genome-wide prediction, solving mixed models and finding variance components through likelihood and Bayesian methods.

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Version

Install

install.packages('NAM')

Monthly Downloads

564

Version

1.7.3

License

GPL-3

Maintainer

Last Published

September 23rd, 2019

Functions in NAM (1.7.3)

SNP H2

SNP heritability
Dataset 2

Multi-environmental trial
MLM Trials

Genomic mixed model
FST

Fixation Index
MLM REML

Restricted Maximum Likelihood
GWAS

Empirical Bayes Genome Wide Association Mapping
MLM Gibbs

Bayesian Mixed Model
Manhattan

Manhattan plot for Association Studies
Optimizations

Internal functions
NAM-package

Nested Association Mapping
SNP QC

SNP Quality Control
GWP

Genome-wide prediction
Dataset 1

Tetra-seed Pods