.atrack,ExpressionSet-method

bioc-NMF

featureNames,NMFfitX-method

featureNames<-,NMF-method

featureNames,NMF-method

metagenes

metagenes<-

metaprofiles

metaprofiles<-

nmeta

nmf,ExpressionSet,ANY,ANY-method

nmf,matrix,ExpressionSet,ANY-method

nmfModel,ANY,ExpressionSet-method

nmfModel,ExpressionSet,ANY-method

nneg,ExpressionSet-method

rnmf,ANY,ExpressionSet-method

rposneg,ExpressionSet-method

run,NMFStrategy,ExpressionSet,ANY-method

sampleNames<-,NMF,ANY-method

sampleNames,NMFfitX-method

sampleNames,NMF-method

seed,ExpressionSet,ANY,ANY-method


  The package NMF provides an optional layer for working
  with common objects and functions defined in the
  Bioconductor platform.


Provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published algorithms
and seeding methods, and provides a framework to test, develop and plug
new/custom algorithms. Most of the built-in algorithms have been optimized
in C++, and the main interface function provides an easy way of performing
parallel computations on multicore machines.

Renaud Gaujoux

Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)

bioc-NMF function

Specific NMF Layer for Bioconductor

bioc-NMF: Specific NMF Layer for Bioconductor

Description

Arguments

Details