cluster_mat

original input matrix that has already been
  appropriately subset in the caller function
  (<code>aheatmap</code>)

param

distfun

Default clustering (linkage)
  method/function

hclustfun

reorderfun

Logical that specifies if NA values should
  be removed

na.rm

index (integer) vector specifying the
  subset indexes used to subset mat. This is required to be
  able to return the original indexes.

subset


  Cluster Matrix Rows in Annotated Heatmaps


internal

Provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published algorithms
and seeding methods, and provides a framework to test, develop and plug
new/custom algorithms. Most of the built-in algorithms have been optimized
in C++, and the main interface function provides an easy way of performing
parallel computations on multicore machines.

cluster_mat: Cluster Matrix Rows in Annotated Heatmaps

Description

Usage

Arguments