metaHeatmap

metaHeatmap,matrix-method

metaHeatmap-methods

metaHeatmap,NMFfitX-method

metaHeatmap,NMF-method

NMF-defunct

Defunct Functions and Classes in the NMF Package

methods

Provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published algorithms
and seeding methods, and provides a framework to test, develop and plug
new/custom algorithms. Most of the built-in algorithms have been optimized
in C++, and the main interface function provides an easy way of performing
parallel computations on multicore machines.

Nicolas Sauwen

Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)

Renaud Gaujoux

Cathal Seoighe

NMF-defunct function

<dl> <dt>object</dt>
<dd>an R object</dd>
 <dt>...</dt>
<dd>other arguments</dd></dl>

Arguments

<dl> <dt>metaHeatmap</dt>
<dd><code>signature(object = "matrix")</code>:
 Defunct method substituted by <code>aheatmap</code>.</dd>
 <dt>metaHeatmap</dt>
<dd><code>signature(object = "NMF")</code>:
 Deprecated method that is substituted by
 <code>coefmap</code> and <code>basismap</code>.</dd>
 <dt>metaHeatmap</dt>
<dd><code>signature(object = "NMFfitX")</code>:
 Deprecated method subsituted by
 <code>consensusmap</code>.</dd>
 
</dl>

Methods

Defunct Functions and Classes in the NMF Package — NMF-defunct

<dl>

 <dt>object</dt>
<dd>an R object</dd>


 <dt>...</dt>
<dd>other arguments</dd>

</dl>

<dl>

 <dt>metaHeatmap</dt>
<dd><code>signature(object = "matrix")</code>:
 Defunct method substituted by <code>aheatmap</code>.</dd>


 <dt>metaHeatmap</dt>
<dd><code>signature(object = "NMF")</code>:
 Deprecated method that is substituted by
 <code>coefmap</code> and <code>basismap</code>.</dd>


 <dt>metaHeatmap</dt>
<dd><code>signature(object = "NMFfitX")</code>:
 Deprecated method subsituted by
 <code>consensusmap</code>.</dd>


 
</dl>

NMF-defunct: Defunct Functions and Classes in the NMF Package

Description

Usage

Arguments

Methods