.atrack,ExpressionSet-method

bioc-NMF

featureNames,NMFfitX-method

featureNames&lt;-,NMF-method

featureNames,NMF-method

metagenes

metagenes&lt;-

metaprofiles

metaprofiles&lt;-

nmeta

nmf,ExpressionSet,ANY,ANY-method

nmf,matrix,ExpressionSet,ANY-method

nmfModel,ANY,ExpressionSet-method

nmfModel,ExpressionSet,ANY-method

nneg,ExpressionSet-method

rnmf,ANY,ExpressionSet-method

rposneg,ExpressionSet-method

run,NMFStrategy,ExpressionSet,ANY-method

sampleNames&lt;-,NMF,ANY-method

sampleNames,NMFfitX-method

sampleNames,NMF-method

seed,ExpressionSet,ANY,ANY-method

<p>The package NMF provides an optional layer for working
  with common objects and functions defined in the
  Bioconductor platform.</p>

Provides a framework to perform Non-negative Matrix
Factorization (NMF). The package implements a set of already published algorithms
and seeding methods, and provides a framework to test, develop and plug
new/custom algorithms. Most of the built-in algorithms have been optimized
in C++, and the main interface function provides an easy way of performing
parallel computations on multicore machines.

Nicolas Sauwen

Algorithms and Framework for Nonnegative Matrix Factorization
(NMF)

Renaud Gaujoux

Cathal Seoighe

bioc-NMF function

Specific NMF Layer for Bioconductor — bioc-NMF

Specific NMF Layer for Bioconductor

bioc-NMF: Specific NMF Layer for Bioconductor

Description

Arguments

Details