NMcreateMatLines

Create text lines for OMEGA and SIGMA Nonmem sections

internal

A complete and seamless 'Nonmem' simulation interface within R. Turns 'Nonmem' control streams into simulation control streams, executes them with specified simulation input data and returns the results. The simulation is performed by 'Nonmem', eliminating manual work and risks of re-implementation of models in other tools.

Philip Delff

NMsim

Seamless 'Nonmem' Simulation Platform

Brian Reilly

Sanaya Shroff

Boris Grinshpun

NMcreateMatLines function

<dl><dt>omegas</dt>
<dd>A data.table with at least `i`, `j` and `value`
columns. See `NMdata::NMreadExt` and the pars element returned
by that function. Must at least have columns `i`, `j`,
`value`, `iblock`, `blocksize`, `FIX`.</dd>
<dt>as.one.block</dt>
<dd>If `TRUE`, all values are printed as one
block. If `FALSE` (default), matrix will be separeted into
blocks based on position non-zero off-diagonal
values. Generally speaking, for `OMEGA` matrices (var-cov
matrices for ETAs), this should be `FALSE`, and for
variance-covariance matrices (like `THETAP`), this should be
`TRUE`.</dd>
<dt>fix</dt>
<dd>Include `FIX` for all lines? If not, none will be
fixed. Currently, there is no support for keeping</dd>
<dt>type</dt>
<dd>The matrix type. `OMEGA` or `SIGMA` - case
in-sensitive. Will be used to print say `$OMEGA` in front of
each line.</dd></dl>

Arguments

Create text lines for OMEGA and SIGMA Nonmem sections — NMcreateMatLines

<dl>

<dt>omegas</dt>
<dd>A data.table with at least `i`, `j` and `value`
columns. See `NMdata::NMreadExt` and the pars element returned
by that function. Must at least have columns `i`, `j`,
`value`, `iblock`, `blocksize`, `FIX`.</dd>


<dt>as.one.block</dt>
<dd>If `TRUE`, all values are printed as one
block. If `FALSE` (default), matrix will be separeted into
blocks based on position non-zero off-diagonal
values. Generally speaking, for `OMEGA` matrices (var-cov
matrices for ETAs), this should be `FALSE`, and for
variance-covariance matrices (like `THETAP`), this should be
`TRUE`.</dd>


<dt>fix</dt>
<dd>Include `FIX` for all lines? If not, none will be
fixed. Currently, there is no support for keeping</dd>


<dt>type</dt>
<dd>The matrix type. `OMEGA` or `SIGMA` - case
in-sensitive. Will be used to print say `$OMEGA` in front of
each line.</dd>

</dl>

NMcreateMatLines: Create text lines for OMEGA and SIGMA Nonmem sections

Description

Usage

Value

Arguments