NSAByTotalAndFracB.matrix

NSAByTotalAndFracB

An Jx2 <code><a rd-options="base" href="/link/matrix?package=NSA&version=0.0.32&to=base" data-mini-rdoc="base::matrix">matrix</a></code>, where J is the number of loci and
                      2 is total and fracB.

data

See <code><a rd-options="R.utils" href="/link/Verbose?package=NSA&version=0.0.32&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose


  Finds normal regions within tumoral samples (total,fracB), where total is the total (non-polymorphic) signal and
  fracB is the allele B fraction.
  It is only loci with a non-missing (<code><a rd-options="base" href="/link/NA?package=NSA&version=0.0.32&to=base" data-mini-rdoc="base::NA">NA</a></code>) fracB value that are
  considered to be SNPs and normalized by CalMaTe.  The other loci
  are left untouched.
 

methods

Post-normalization of total copy-number estimates.

NSAByTotalAndFracB.matrix: Finds normal regions within tumoral samples (total,fracB)

Description

Usage

Arguments

Value