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NetWeaver (version 0.0.6)

Graphic Presentation of Complex Genomic and Network Data Analysis

Description

Implements various simple function utilities and flexible pipelines to generate circular images for visualizing complex genomic and network data analysis features.

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Version

Install

install.packages('NetWeaver')

Monthly Downloads

141

Version

0.0.6

License

GPL-3

Issues

0

Pull Requests

0

Stars

4

Forks

0

Maintainer

Minghui Wang

Last Published

February 26th, 2019

Functions in NetWeaver (0.0.6)

ucsc.hg19.cytoband

Human chromosome cytoband
rc.plot.text

Plot Text
rc.plot.track

Plot Track
Modules

Example Module Dataset
NetWeaver

Graphic Presentation of Complex Genomic and Network Data Analysis
rc.plot.point

Plot Point
rc.plot.ribbon

Plot Ribbon
rc.track.pos

Get Track Positions
rc.initialize

Initialize Circos Plot Parameters
rc.plot.area

Setup Plot Area
rc.plot.heatmap

Plot Heat-map
rc.plot.histogram

Plot Histogram, Barchart or Heat-map
rc.plot.track.id

Plot Track Id
rc.reset.params

Reset Circos Plot Parameters
rc.plot.link

Plot Link
rc.plot.mHistogram

Plot Histogram or Barplot Across Chromosomes
rc.get.coordinates

Get Coordinates
rc.get.params

Get Parameters
rc.plot.barchart

Bar Plots
rc.plot.grColLegend

Plot Gradient Color Legend
getrankp

getrankp
is.overlap

Region overlap test
rc.plot.ideogram

Plot Ideogram
rc.plot.line

Plot Line
ensemble_rank

Ensemble Rank