NetworkToolbox (version 1.4.2)

participation: Participation Coefficient

Description

Computes the participation coefficient for each node. The participation coefficient measures the strength of a node's connections within its community. Positive and negative signed weights for participation coefficients are computed separately.

Usage

participation(A, comm = c("walktrap", "louvain"))

Arguments

A

Network adjacency matrix

comm

A vector of corresponding to each item's community. Defaults to "walktrap" for the cluster_walktrap community detection algorithm. Set to "louvain" for the louvain community detection algorithm. Can also be set to user-specified communities (see examples)

Value

Returns a list containing:

overall

Participation coefficient without signs considered

positive

Participation coefficient with only positive sign

negative

Participation coefficient with only negative sign

Details

Values closer to 1 suggest greater within-community connectivity and values closer to 0 suggest greater between-community connectivity

References

Guimera, R., & Amaral, L. A. N. (2005). Functional cartography of complex metabolic networks. Nature, 433, 895-900.

Rubinov, M., & Sporns, O. (2010). Complex network measures of brain connectivity: Uses and interpretations. NeuroImage, 52, 1059-1069.

Examples

# NOT RUN {
#theoretical factors
comm <- rep(1:8, each = 6)

# Pearson's correlation only for CRAN checks
A <- TMFG(neoOpen, normal = FALSE)$A

pc <- participation(A, comm = comm)

# Walktrap factors
wpc <- participation(A, comm = "walktrap")

# }