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ORCME (version 2.0.2)

Order Restricted Clustering for Microarray Experiments

Description

Provides clustering of genes with similar dose response (or time course) profiles. It implements the method described by Lin et al. (2012).

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Version

Install

install.packages('ORCME')

Monthly Downloads

176

Version

2.0.2

License

GPL-3

Maintainer

Rudradev Sengupta

Last Published

July 31st, 2015

Functions in ORCME (2.0.2)

monotoneDirection

The monotone means under increasing/decreasing trend
plotLambda

Plot the variaty of the properties dependent on the proportion of heterogeneity in observed data set
geneData

Gene Expression Data Example
plotIsomeans

Plot of the observed gene expression and the isotonic means with respect to dose
resampleORCME

Estimation of the proportion of the heterogeneity in the observed data for clustering
plotCluster

Plotting the gene specific profiles for one given cluster of genes
ORCME

Order restricted clustering for dose-response trends in microarray experiments
doseData

Dose Data Example