norm_internal_assay_median

The function computes the median value of the the quantification method for
each Olink assay in the set of samples <code>samples</code>, and it adds the column
<code>Project</code>.

A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.

Kathleen Nevola

OlinkAnalyze

Facilitate Analysis of Proteomic Data from Olink

Marianne Sandin

Jamey Guess

Simon Forsberg

Christoffer Cambronero

Pascal Pucholt

Boxi Zhang

Masoumeh Sheikhi

Klev Diamanti

Amrita Kar

Lei Conze

Kristyn Chin

Danai Topouza

Stephen Pollo

Kang Dong

Kristian Hodén

Per Eriksson

Nicola Moloney

Britta Lötstedt

Emmett Sprecher

Jessica Barbagallo

Olof Mansson

Ola Caster

Olink 

norm_internal_assay_median function

<dl><dt>df</dt>
<dd>The dataset to calculate medians from (required).</dd>
<dt>samples</dt>
<dd>Character vector of sample identifiers to be used for
adjustment factor calculation in the dataset <code>df</code> (required).</dd>
<dt>name</dt>
<dd>Project name of the dataset that will be added in the column
<code>Project</code> (required).</dd>
<dt>cols</dt>
<dd>Named list of column names identified in the dataset <code>df</code>
(required).</dd></dl>

Arguments

Author

Compute median value of the quantification method for each Olink assay — norm_internal_assay_median

<dl>

<dt>df</dt>
<dd>The dataset to calculate medians from (required).</dd>


<dt>samples</dt>
<dd>Character vector of sample identifiers to be used for
adjustment factor calculation in the dataset <code>df</code> (required).</dd>


<dt>name</dt>
<dd>Project name of the dataset that will be added in the column
<code>Project</code> (required).</dd>


<dt>cols</dt>
<dd>Named list of column names identified in the dataset <code>df</code>
(required).</dd>

</dl>

Compute median value of the quantification method for each Olink assay

norm_internal_assay_median: Compute median value of the quantification method for each Olink assay

Description

Usage

Value

Arguments

Author

Details