norm_internal_rename_cols

This function handles cases when specific columns referring to the same thing
are named differently in <code>df1</code> and <code>df2</code> normalization datasets. It only
renames columns
panel_version, qc_warn, and assay_warn based on
their names in the reference dataset.#'

A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.

Kathleen Nevola

OlinkAnalyze

Facilitate Analysis of Proteomic Data from Olink

Marianne Sandin

Jamey Guess

Simon Forsberg

Christoffer Cambronero

Pascal Pucholt

Boxi Zhang

Masoumeh Sheikhi

Klev Diamanti

Amrita Kar

Lei Conze

Kristyn Chin

Danai Topouza

Stephen Pollo

Kang Dong

Kristian Hodén

Per Eriksson

Nicola Moloney

Britta Lötstedt

Emmett Sprecher

Jessica Barbagallo

Olof Mansson

Ola Caster

Olink 

norm_internal_rename_cols function

<dl><dt>ref_cols</dt>
<dd>Named list of column names identified in the reference
dataset.</dd>
<dt>not_ref_cols</dt>
<dd>Named list of column names identified in the
non-reference dataset.</dd>
<dt>not_ref_df</dt>
<dd>Non-reference dataset to be used in normalization.</dd></dl>

Arguments

Author

Update column names of non-reference dataset based on those of reference
dataset — norm_internal_rename_cols

<dl>

<dt>ref_cols</dt>
<dd>Named list of column names identified in the reference
dataset.</dd>


<dt>not_ref_cols</dt>
<dd>Named list of column names identified in the
non-reference dataset.</dd>


<dt>not_ref_df</dt>
<dd>Non-reference dataset to be used in normalization.</dd>

</dl>

Update column names of non-reference dataset based on those of reference
dataset

norm_internal_rename_cols: Update column names of non-reference dataset based on those of reference dataset

Description

Usage

Value

Arguments

Author