npx_data1

Data is generated randomly to demonstrate use of functions in this package.

datasets

A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.

Kathleen Nevola

OlinkAnalyze

Facilitate Analysis of Proteomic Data from Olink

Marianne Sandin

Jamey Guess

Simon Forsberg

Christoffer Cambronero

Pascal Pucholt

Boxi Zhang

Masoumeh Sheikhi

Klev Diamanti

Amrita Kar

Lei Conze

Kristyn Chin

Danai Topouza

Stephen Pollo

Kang Dong

Kristian Hodén

Per Eriksson

Nicola Moloney

Britta Lötstedt

Emmett Sprecher

Jessica Barbagallo

Olof Mansson

Ola Caster

Olink 

npx_data1 function

In addition to standard read_NPX() columns, this dataset also contains columns:<dl>
<dt>Subject</dt>
<dd>Subject Identifier</dd><dt>Treatment</dt>
<dd>Treated or Untreated</dd><dt>Site</dt>
<dd>Site indicator, 5 unique values</dd><dt>Time</dt>
<dd>Baseline, Week.6 and Week.12</dd><dt>Project</dt>
<dd>Project ID number</dd>
</dl>

Format

NPX Data in Long format — npx_data1

In addition to standard read_NPX() columns, this dataset also contains columns:<dl>
<dt>Subject</dt>
<dd>Subject Identifier</dd>

<dt>Treatment</dt>
<dd>Treated or Untreated</dd>

<dt>Site</dt>
<dd>Site indicator, 5 unique values</dd>

<dt>Time</dt>
<dd>Baseline, Week.6 and Week.12</dd>

<dt>Project</dt>
<dd>Project ID number</dd>


</dl>

NPX Data in Long format

npx_data1: NPX Data in Long format

Description

Usage

Arguments

Format

Details