OlinkAnalyze (version 4.2.0)

olink_displayPlateLayout: Plot all plates colored by a variable

Description

Displays each plate in a facet with cells colored by the given variable using ggplot and ggplot2::geom_tile.

Usage

olink_displayPlateLayout(
  data,
  fill.color,
  PlateSize = 96,
  num_ctrl = 8,
  rand_ctrl = FALSE,
  Product,
  include.label = FALSE
)

Value

An object of class "ggplot" showing each plate in a facet with the cells colored by values in column fill.color in input data.

Arguments

data

tibble/data frame in long format returned from the olink_plate_randomizer function.

fill.color

Column name to be used as coloring variable for wells.

PlateSize

Integer. Either 96 or 48. 96 is default.

num_ctrl

Numeric. Number of controls on each plate (default = 8)

rand_ctrl

Logical. Whether controls are added to be randomized across the plate (default = FALSE)

Product

String. Name of Olink product used to set PlateSize if not provided. Optional.

include.label

Should the variable group be shown in the plot.

See Also

• olink_plate_randomizer() for generating a plating scheme

• olink_displayPlateDistributions() for validating that sites are properly randomized

Examples

randomized.manifest <- olink_plate_randomizer(manifest)
olink_displayPlateLayout(data = randomized.manifest, fill.color="Site")