olink_dist_plot

Generates boxplots of NPX vs. SampleID colored by QC_Warning (default) or any other grouping variable
and faceted by Panel using ggplot and ggplot2::geom_boxplot.

A collection of functions to facilitate analysis of proteomic
data from Olink, primarily NPX data that has been exported from Olink
Software. The functions also work on QUANT data from
Olink by log- transforming the QUANT data. The functions are focused
on reading data, facilitating data wrangling and quality control
analysis, performing statistical analysis and generating figures to
visualize the results of the statistical analysis. The goal of this
package is to help users extract biological insights from proteomic
data run on the Olink platform.

Kathleen Nevola

OlinkAnalyze

Facilitate Analysis of Proteomic Data from Olink

Marianne Sandin

Jamey Guess

Simon Forsberg

Christoffer Cambronero

Pascal Pucholt

Boxi Zhang

Masoumeh Sheikhi

Klev Diamanti

Amrita Kar

Lei Conze

Kristyn Chin

Danai Topouza

Stephen Pollo

Kang Dong

Kristian Hodén

Per Eriksson

Nicola Moloney

Britta Lötstedt

Emmett Sprecher

Jessica Barbagallo

Olof Mansson

Ola Caster

Olink 

olink_dist_plot function

<dl><dt>df</dt>
<dd>NPX data frame in long format. Must have columns SampleID, NPX and Panel</dd>
<dt>color_g</dt>
<dd>Character value indicating which column to use as fill color (default: QC_Warning)</dd>
<dt>...</dt>
<dd>Color option passed to specify color order.</dd></dl>

Arguments

Function to plot the NPX distribution by panel — olink_dist_plot

<dl>

<dt>df</dt>
<dd>NPX data frame in long format. Must have columns SampleID, NPX and Panel</dd>


<dt>color_g</dt>
<dd>Character value indicating which column to use as fill color (default: QC_Warning)</dd>


<dt>...</dt>
<dd>Color option passed to specify color order.</dd>

</dl>

Function to plot the NPX distribution by panel

olink_dist_plot: Function to plot the NPX distribution by panel

Description

Usage

Value

Arguments

Examples