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OlinkAnalyze (version 4.2.0)

olink_norm_input_assay_overlap: Check datasets and reference_medians for Olink identifiers not shared across datasets.

Description

Check datasets and reference_medians for Olink identifiers not shared across datasets.

Usage

olink_norm_input_assay_overlap(
  lst_df,
  reference_medians,
  lst_cols,
  norm_mode = norm_mode
)

Value

A named list containing lst_df and reference_medians

will assays shared across all datasets.

Arguments

lst_df

Named list of datasets to be normalized.

reference_medians

Dataset with columns "OlinkID" and "Reference_NPX". Used for reference median normalization.

lst_cols

Named list of vectors with the required column names for each dataset in lst_df.

norm_mode

Character string indicating the type of normalization to be performed. Expecting one of bridge, subset, ref_median or norm_cross_product. # nolint

Author

Klev Diamanti