MicrosatTrialDataSmall


  This data set gives the genotypes of individuals located in the file LocationsTrialDataSmall to be used as a test data only.  The columns here would be LocationName, LocationNumber, Locus1, Locus2, etc.  Each individual would take up 2 rows (one for each allele) with the same LocationName and LocationNumber.  The value under Locus would be the length of the allele of that individual.  Note that unknown individuals should have location number "-1".


datasets

Used primarily for estimates of allele frequency surfaces from point estimates.
It can also place individuals of unknown origin back onto the geographic map with great accuracy.
Additionally, it can place admixed individuals by estimating contributing fractions at each
location on a map. Lastly, it can rank SNPs by their ability to differentiate populations.
See "Fast Spatial Ancestry via Flexible Allele Frequency Surfaces" (John Michael Ranola, John
Novembre, Kenneth Lange) in Bioinformatics 2014 for more info.

John Michael O Ranola

OriGen

Fast Spatial Ancestry via Flexible Allele Frequency Surfaces

MicrosatTrialDataSmall function

A text file containing names and locations.

MicrosatTrialDataSmall: Genotypes of individuals in located at LocationsTrialDataSmall

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