OscopeExampleData


	Simulated gene expression to evaluate Oscope. 600 genes and 30 cell are simulated.
	The expression mean of the genes are randomly simulated in the range of 10-10000.


datasets

Oscope is a statistical pipeline developed to identifying
and recovering the base cycle profiles of oscillating genes in
an unsynchronized single cell RNA-seq experiment. The Oscope
pipeline includes three modules: a sine model module to search
for candidate oscillator pairs; a K-medoids clustering module
to cluster candidate oscillators into groups; and an extended
nearest insertion module to recover the base cycle order for
each oscillator group.

Ning Leng

Oscope

Oscope - A statistical pipeline for identifying oscillatory
genes in unsynchronized single cell RNA-seq

OscopeExampleData function

GeneExampleData is a matrix with 600 genes (rows) and 30 cells (columns).

Format

Simulated gene expression to evaluate Oscope. 600 genes and 30 cell are simulated.
	The expression mean of the genes are randomly simulated in the range of 10-10000.

OscopeExampleData: Simulated gene level data set with 600 genes and 30 cells.

Description

Arguments

Format

Examples