PAGIData

netWorkdata

pathway.db


  The variables in the environment variable PAGIData of the system.


file

The package can identify the dysregulated KEGG pathways
based on global influence from the internal effect of pathways
and crosstalk between pathways. (1) The PAGI package can
prioritize the pathways associated with two biological states
by statistical significance or FDR. (2) The PAGI package can
evaluated the global influence factor (GIF) score in the global
gene-gene network constructed based on the relationships of
genes extracted from each pathway in KEGG database and the
overlapped genes between pathways.

Junwei Han

PAGI

The package can identify the dysregulated KEGG pathways based on
global influence from the internal effect of pathways and
crosstalk between pathways.

PAGIData function

Format

The variables in the environment variable PAGIData of the system

PAGIData: The variables in the environment variable PAGIData of the system

Description

Arguments

Format

Details