papiResults


An example of the data frame produced by papi, where the first column contains the name of the metabolic pathways identified and the following columns contains their respective Activity Score (AS) in the different samples analyzed.


datasets

The Pathway Activity Profiling - PAPi - is an R package for predicting the activity of metabolic pathways based solely on a metabolomics data set containing a list of metabolites identified and their respective abundances in different biological samples. PAPi generates hypothesis that improves the final biological interpretation. See Aggio, R.B.M; Ruggiero, K. and Villas-Boas, S.G. (2010) - Pathway Activity Profiling (PAPi): from metabolite profile to metabolic pathway activity. Bioinformatics.

Raphael Aggio

PAPi

Predict metabolic pathway activity based on metabolomics data

papiResults function

A data frame where the first column contains the name of the metabolic pathways identified and the following columns contains their respective Activity Score (AS) in the different samples analyzed.
  <dl>
    <dt><code>pathwayname</code></dt><dd>a list of metabolic pathways identified.</dd> <dt><code>Sample1</code></dt><dd>the AS of each metabolic pathway in Sample 1</dd> <dt><code>Sample2</code></dt><dd>the AS of each metabolic pathway in Sample 2</dd> <dt><code>Sample3</code></dt><dd>the AS of each metabolic pathway in Sample 3</dd> <dt><code>Sample4</code></dt><dd>the AS of each metabolic pathway in Sample 4</dd> <dt><code>Sample5</code></dt><dd>the AS of each metabolic pathway in Sample 5</dd> <dt><code>Sample6</code></dt><dd>the AS of each metabolic pathway in Sample 6</dd> </dl> 

Format

An example of the data frame produced by papi, where the first column contains the name of the metabolic pathways identified and the following columns contains their respective Activity Score (AS) in the different samples analyzed.

An example of the data frame produced by <code><a href="papi" rd-options="">papi</a></code>.


An example of the data frame produced by <code><a rd-options="" href="/link/papi?package=PAPi&version=1.12.0" data-mini-rdoc="PAPi::papi">papi</a></code>.


papiResults: An example of the data frame produced by `papi`.

Description

Usage

Arguments

Format

Examples