
Print and plot generic for the PRISMA matrix factorization objects.
# S3 method for prismaMF
plot(x, nLines = NULL, baseIndex = NULL, sampleIndex = NULL,
minValue = NULL, noRowClustering = FALSE, noColClustering = FALSE, type
= c("base", "coordinates"), ...)
PRISMA matrix factorization object
number of lines that should be plotted
which bases should be plotted
which samples should be plotted
cut-off value, i.e., every value smaller than minValue
won't be shown
don't cluster the rows
don't cluster the columns
show the base (type = "base"
, i.e. the type = "coordinates"
, i.e. the
not used
estimateDimension
, prismaHclust
, prismaDuplicatePCA
, prismaNMF
# NOT RUN {
# please see the vingette for examles
# }
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