ThresholdedNanoString-class

Holds output and diagnostics from thresholdNanoString
Not intended to be called by the user.

Core data structures and methods for handling single cell assay
data.

Greg Finak

PRIST

Probabilistic Inference for Single Cell Transcriptomics

ThresholdedNanoString-class function

<dl class="dl-horizontal">
<dt>melted</dt><dd>A <code>data.frame</code> containing a melted version of <code>nsa</code>, plus the columns 'ps', giving the probability that a measurement belongs to the signal cluster, 'clusterID' the inferred cluster</dd>
<dt>nsa</dt><dd>The thresholded <code>NanoStringAssay</code> with the thresholded expression in layer <code>et</code></dd>
<dt>densities</dt><dd>A <code>list</code> of length <code>ncol(nsa)</code> of marginal (mixture model) densities of each gene.</dd>
<dt>means</dt><dd>A <code>matrix</code> dimension <code>ncol(nsa)</code> \(\times\) 2 given the posterior mean of each cluster.</dd>
<dt>props</dt><dd>A <code>matrix</code> dimension <code>ncol(nsa)</code> \(\times\) 2 given the posterior probability of each cluster.</dd>
<dt>startLayer</dt><dd>A <code>character</code> giving the initial layer that was used to generate the thresholding</dd>
</dl>

ThresholdedNanoString-class: Holds output and diagnostics from thresholdNanoString Not intended to be called by the user.

Description

Arguments

Slots

See Also