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PRIST (version 0.925)

getConcordance: getConcordance

Description

Get the concordance between two

Usage

getConcordance(singleCellRef, singleCellcomp, groups = NULL,
  fun.natural = expavg, fun.cycle = logmean)

Arguments

singleCellRef

"reference" SingleCellAssay

singleCellcomp

"comparison" SingleCellAssay

groups

character vector giving variable(s) on which the comparison is conditioned

fun.natural

function to transform the SingleCellAssays to a mRNA proportional level

fun.cycle

inverse function of fun.natural

Value

concordance between two assays

Details

Return the concordance between two assays (i.e. single cell and hundred cell) The "average" of singleCellRef (after adjusting for the number of cells) and singleCellComp are taken per gene, per groups. A data.frame with one row per gene-groups is returned with some additional columns.