estimateDeltaLOH.PairedPSCBS

PairedPSCBS.estimateDeltaLOH

estimateDeltaLOH,PairedPSCBS-method

Estimate a threshold for calling LOH from DH to be used by the <code>*callLOH()</code> method.

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

Frank E Harrell Jr

estimateDeltaLOH.PairedPSCBS function

<dl> <dt>flavor</dt>
<dd>A <code><a href="/link/character?package=PSCBS&version=0.67.0" data-mini-rdoc="PSCBS::character">character</a></code> string specifying which type of
 estimator to use.</dd> <dt>...</dt>
<dd>Additional arguments passed to the estimator.</dd> <dt>max</dt>
<dd>(Optional) The maximum estimate allowed. If greater than
 this value, the estimate will be truncated.</dd> <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd></dl>

Arguments

Author

Estimate a threshold for calling LOH from DH — estimateDeltaLOH.PairedPSCBS

<dl>

 <dt>flavor</dt>
<dd>A <code><a href='https://rdrr.io/r/base/character.html'>character</a></code> string specifying which type of
 estimator to use.</dd>

 <dt>...</dt>
<dd>Additional arguments passed to the estimator.</dd>

 <dt>max</dt>
<dd>(Optional) The maximum estimate allowed. If greater than
 this value, the estimate will be truncated.</dd>

 <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd>

</dl>

Estimate a threshold for calling LOH from DH

estimateDeltaLOH.PairedPSCBS: Estimate a threshold for calling LOH from DH

Description

Usage

Value

Arguments

Author

See Also