joinSegments.CBS

CBS.joinSegments

joinSegments,CBS-method

Joins neighboring segments such that there is no gap in between them.
 For instance, consider two neighboring segments [x1,x2] and [x3,x4]
 with x1 &lt; x2 &lt; x3 &lt; x4. After join the segments, they are
 [x1,x23] and [x23,x4] where x23 = (x2 + x3)/2.

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

Frank E Harrell Jr

joinSegments.CBS function

<dl> <dt>range</dt>
<dd>(optional) A <code><a href="/link/numeric?package=PSCBS&version=0.67.0" data-mini-rdoc="PSCBS::numeric">numeric</a></code> <code><a href="/link/vector?package=PSCBS&version=0.67.0" data-mini-rdoc="PSCBS::vector">vector</a></code> of length two.</dd> <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd> <dt>...</dt>
<dd>Not used.</dd></dl>

Arguments

Author

Joins neighboring segments such that there is no gap in between them — joinSegments.CBS

<dl>

 <dt>range</dt>
<dd>(optional) A <code><a href='https://rdrr.io/r/base/numeric.html'>numeric</a></code> <code><a href='https://rdrr.io/r/base/vector.html'>vector</a></code> of length two.</dd>

 <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

</dl>

Joins neighboring segments such that there is no gap in between them

joinSegments.CBS: Joins neighboring segments such that there is no gap in between them

Description

Usage

Value

Arguments

Author

Details