mergeThreeSegments.AbstractCBS

AbstractCBS.mergeThreeSegments

mergeThreeSegments,AbstractCBS-method

Merge a segment and its two flanking segments into one segment, and recalculating the segment statistics.

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

Frank E Harrell Jr

mergeThreeSegments.AbstractCBS function

<dl> <dt>middle</dt>
<dd>An <code><a href="/link/integer?package=PSCBS&version=0.67.0" data-mini-rdoc="PSCBS::integer">integer</a></code> specifying the three segments
 (middle-1, middle, middle+1) to be merged.</dd> <dt>...</dt>
<dd>Additional arguments passed to <code>*mergeTwoSegments()</code>.</dd></dl>

Arguments

Author

Merge a segment and its two flanking segments — mergeThreeSegments.AbstractCBS

<dl>

 <dt>middle</dt>
<dd>An <code><a href='https://rdrr.io/r/base/integer.html'>integer</a></code> specifying the three segments
 (middle-1, middle, middle+1) to be merged.</dd>

 <dt>...</dt>
<dd>Additional arguments passed to <code>*mergeTwoSegments()</code>.</dd>

</dl>

Merge a segment and its two flanking segments

mergeThreeSegments.AbstractCBS: Merge a segment and its two flanking segments

Description

Usage

Value

Arguments

Author

See Also