Plots copy numbers along the genome for one or more chromosomes.
 Each type of track is plotted in its own panel.

plotTracks.CBS

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

Frank E Harrell Jr

plotTracks.CBS function

Plots copy numbers along the genome — plotTracks.CBS

<dl>

 <dt>x</dt>
<dd>A result object returned by <code>segmentByCBS</code>().</dd>

 <dt>pch</dt>
<dd>The type of points to use.</dd>

 <dt>Clim</dt>
<dd>The range of copy numbers.</dd>

 <dt>xScale</dt>
<dd>The scale factor used for genomic positions.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

 <dt>add</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, the panels plotted are added to the existing plot,
 otherwise a new plot is created.</dd>

</dl>

Arguments

Author

Plots copy numbers along the genome

plotTracks.CBS: Plots copy numbers along the genome

Description

Usage

Arguments

Value