PTXQC (version 1.1.1)

plot_MBRgain: Plot MaxQuant Match-between-runs id transfer performance.

Description

The plots shows the different categories of peak classes

Usage

plot_MBRgain(data, title_sub = "")

Value

GGplot object

Arguments

data

A data.frame with columns as described above

title_sub

Subtitle text

Details

The input is a data.frame with columns 'fc.raw.file' - raw file name 'single' - fraction of peptides with are represent only once 'multi.inRT' - fraction of peptides with are represent multiple times, but within a certain RT peak width 'multi.outRT' - fraction of peptides with are represent multiple times, with large RT distance 'sample' - raw file where each row represents one peptide sequence.

Examples

 data = data.frame(fc.raw.file = paste("file", letters[1:4]),
                   abs = c(5461, 5312, 3618, 502), 
                   pc = c(34, 32, 22, 2))
 plot_MBRgain(data, "MBR gain: 18%")