QCMetaFilenames

<p>The internal data is filled using, e.g. 'getMetaFilenames()'</p>

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

Juliane Schmachtenberg

Swenja Wagner

Patricia Scheil

Tom Waschischek

Guido Mastrobuoni

QCMetaFilenames function

<p><code>R6P::Singleton</code> -&gt; <code>QCMetaFilenames</code></p>

Super class

<p><div class="r6-fields"></div></p><dl>
<dt><code>data</code></dt>
<dd><p>Stores the data of the singleton. Set the data once before using the singleton all over the place</p></dd><p></p><p>
</p></dl><p></p>

Public fields


<div class="section" id="public-methods">
<h3>Public methods</h3><p></p><p><ul>
<li><p><a href="/link/QCMetaFilenames%24clone()?package=PTXQC&version=1.1.2" data-mini-rdoc="PTXQC::QCMetaFilenames$clone()"><code>QCMetaFilenames$clone()</code></a></p></li>
</ul></p><p></p></div><p><details open><summary>Inherited methods</summary>
<ul>
<li><span class="pkg-link" data-pkg="R6P" data-topic="Singleton" data-id="initialize"><a href="/link/R6P%3A%3ASingleton%24initialize()?package=PTXQC&version=1.1.2" data-mini-rdoc="PTXQC::R6P::Singleton$initialize()"><code>R6P::Singleton$initialize()</code></a></span></li>
</ul>
</details></p><p><hr>
<a id="method-QCMetaFilenames-clone"></a></p><div class="section" id="method-clone-">
<h3>Method <code>clone()</code></h3>
<p>The objects of this class are cloneable with this method.</p><div class="section" id="usage">
<h4>Usage</h4>
<p><div class="r"></div></p><pre><code>QCMetaFilenames$clone(deep = FALSE)</code></pre><p></p></div><p></p>
</div><p></p><p><div class="section" id="arguments">
<h4>Arguments</h4>
<p><div class="arguments"></div></p><dl>
<dt><code>deep</code></dt>
<dd><p>Whether to make a deep clone.</p></dd></dl></div></p><p>
</p><p></p>
<p></p><p>
</p>

Methods

Define a Singleton class which holds the full raw filenames (+path) and their PSI-MS CV terms for usage in the mzQC metadata — QCMetaFilenames

<p><div class="r6-fields"></p><dl>
<dt><code>data</code></dt>
<dd><p>Stores the data of the singleton. Set the data once before using the singleton all over the place</p></dd>


</dl><p></div></p>


<div class='section' id='public-methods'>
<h3>Public methods</h3>

<ul>
<li><p><a href='#method-QCMetaFilenames-clone'><code>QCMetaFilenames$clone()</code></a></p></li>
</ul>

</div><p><details open><summary>Inherited methods</summary>
<ul>
<li><span class="pkg-link" data-pkg="R6P" data-topic="Singleton" data-id="initialize"><a href='../../R6P/html/Singleton.html#method-Singleton-initialize'><code>R6P::Singleton$initialize()</code></a></span></li>
</ul>
</details>

<hr>
<a id="method-QCMetaFilenames-clone"></a></p><div class='section' id='method-clone-'>
<h3>Method <code>clone()</code></h3>
<p>The objects of this class are cloneable with this method.</p><div class='section' id='usage'>
<h4>Usage</h4>
<p><div class="r"></p><pre><code>QCMetaFilenames$clone(deep = FALSE)</code></pre><p></div></p>
</div>

<div class='section' id='arguments'>
<h4>Arguments</h4>
<p><div class="arguments"></p><dl>
<dt><code>deep</code></dt>
<dd><p>Whether to make a deep clone.</p></dd>


</dl><p></div></p>
</div>

</div>


QCMetaFilenames: Define a Singleton class which holds the full raw filenames (+path) and their PSI-MS CV terms for usage in the mzQC metadata

Description

Arguments

Super class

Public fields

Methods

Public methods

Method `clone()`

Usage

Arguments

Description

Arguments

Super class

Public fields

Methods

Public methods

Method clone()

Usage

Arguments

Method `clone()`