checkEnglishLocale

When MaxQuant is run with a wrong locale (i.e. the decimal separator is not a '.', but a ','), 
then MaxQuant results are plainly wrong and broken. The can be detected by, e.g. checking for negative charge annotation

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

Juliane Schmachtenberg

Swenja Wagner

Patricia Scheil

Tom Waschischek

Guido Mastrobuoni

checkEnglishLocale function

<dl><dt>df_evd</dt>
<dd>Evidence table from which we only need the 'charge' column</dd></dl>

Arguments

When MaxQuant is run with a wrong locale (i.e. the decimal separator is not a '.', but a ','), 
then MaxQuant results are plainly wrong and broken. The can be detected by, e.g. checking for negative charge annotation — checkEnglishLocale

<dl>

<dt>df_evd</dt>
<dd>Evidence table from which we only need the 'charge' column</dd>

</dl>

When MaxQuant is run with a wrong locale (i.e. the decimal separator is not a '.', but a ','), 
then MaxQuant results are plainly wrong and broken. The can be detected by, e.g. checking for negative charge annotation

checkEnglishLocale: When MaxQuant is run with a wrong locale (i.e. the decimal separator is not a '.', but a ','), then MaxQuant results are plainly wrong and broken. The can be detected by, e.g. checking for negative charge annotation

Description

Usage

Arguments