getMetaFilenames

Parses the given mqpar.xml file (or, if not found, tries the 'txt_folder' + '/../../' folder (i.e. where the raw data should be)) to extract the full filepaths for all Raw files

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

Juliane Schmachtenberg

Swenja Wagner

Patricia Scheil

Tom Waschischek

Guido Mastrobuoni

getMetaFilenames function

<dl><dt>mqpar_file</dt>
<dd>Location of the mqpar.xml (can be empty, if unknown)</dd>
<dt>txt_folder</dt>
<dd>Fallback option: path to the txt folder (which contains evidence.txt, etc)</dd></dl>

Arguments

Parses the given mqpar.xml file (or, if not found, tries the 'txt_folder' + '/../../' folder (i.e. where the raw data should be)) to extract the full filepaths for all Raw files — getMetaFilenames

<dl>

<dt>mqpar_file</dt>
<dd>Location of the mqpar.xml (can be empty, if unknown)</dd>


<dt>txt_folder</dt>
<dd>Fallback option: path to the txt folder (which contains evidence.txt, etc)</dd>

</dl>

Parses the given mqpar.xml file (or, if not found, tries the 'txt_folder' + '/../../' folder (i.e. where the raw data should be)) to extract the full filepaths for all Raw files

getMetaFilenames: Parses the given mqpar.xml file (or, if not found, tries the 'txt_folder' + '/../../' folder (i.e. where the raw data should be)) to extract the full filepaths for all Raw files

Description

Usage

Value

Arguments