getMetricsObjects

Get all currently available metrics

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

Juliane Schmachtenberg

Swenja Wagner

Patricia Scheil

Tom Waschischek

Guido Mastrobuoni

getMetricsObjects function

<dl><dt>DEBUG_PTXQC</dt>
<dd>Use qc objects from the package (FALSE) or from environment (TRUE/DEBUG)</dd></dl>

Arguments

Get all currently available metrics — getMetricsObjects

<dl>

<dt>DEBUG_PTXQC</dt>
<dd>Use qc objects from the package (FALSE) or from environment (TRUE/DEBUG)</dd>

</dl>

getMetricsObjects: Get all currently available metrics

Description

Usage

Value

Arguments