renameFile

Given a vector of (short/long) filenames, translate to the (long/short) version

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

Juliane Schmachtenberg

Swenja Wagner

Patricia Scheil

Tom Waschischek

Guido Mastrobuoni

renameFile function

<dl><dt>f_names</dt>
<dd>Vector of filenames</dd>
<dt>mapping</dt>
<dd>A data.frame with from,to columns</dd></dl>

Arguments

Given a vector of (short/long) filenames, translate to the (long/short) version — renameFile

<dl>

<dt>f_names</dt>
<dd>Vector of filenames</dd>


<dt>mapping</dt>
<dd>A data.frame with from,to columns</dd>

</dl>

renameFile: Given a vector of (short/long) filenames, translate to the (long/short) version

Description

Usage

Value

Arguments