If numberOfThreads is 1, should we fall back to running the
process in the main thread?
setAndromedaTempFolder
When TRUE, the andromedaTempFolder option will be copied to each
thread.
setAndromedaMemoryLimit
When TRUE, the andromedaMemoryLimit option will be set in each
thread to be either the global andromedaMemoryLimit / numberOfThreads
or 75 percent of the system memory / number of threads.